PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040675001
Common NameGSBRNA2T00040675001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 326aa    MW: 37803.6 Da    PI: 6.3167
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040675001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.23.1e-101913311128
                  NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                          de ++ +yLk+ +++     +++ +++d+++ +P++       + +++ f + + ++++ gk      + g W+   +dk + ++ +g+l
  GSBRNA2T00040675001  19 DELMLLRYLKPMIDDGASWPQHFAEDADVFNKNPSTVF-----NPENTVFLIVKPRTETCGKTDG--CEYGSWRIMVRDKLIRNEeTGKL 101
                          5556789******99996666779999*********95.....4456677788878777665544..4689***********99878889 PP

                  NAM 100 vglkktLvfy.kgrapkge..ktdWvmheyrl 128
                           g kk+L f  k+++ +g+  k +Wvm+eyrl
  GSBRNA2T00040675001 102 LGFKKILKFCvKKTKTRGReyKRSWVMEEYRL 133
                          *********96334444444499*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.749148IPR003441NAC domain
SuperFamilySSF1019419.55E-1919146IPR003441NAC domain
PfamPF023652.3E-620133IPR003441NAC domain
PROSITE profilePS5100515.473174323IPR003441NAC domain
SuperFamilySSF1019412.75E-20176321IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAAADDYLEI KDELMGAGDE LMLLRYLKPM IDDGASWPQH FAEDADVFNK NPSTVFNPEN  60
TVFLIVKPRT ETCGKTDGCE YGSWRIMVRD KLIRNEETGK LLGFKKILKF CVKKTKTRGR  120
EYKRSWVMEE YRLPNPKQDH VICKIRLLFQ TEIGFLLFKH FSYSCGPLPA KQSLPAYGYG  180
FPNPEDEGAY YLQSLIDHEN EWPSYVTNDV YCMHPSALVD PHRDQMFARF GLCIFANRTE  240
ACGYTDGCES GCWRIMEGDK PISSIMVGEM FGYRRVFKFC EKDIDKHLGK VDGEVMFLTW  300
IMEEYRLAEE EMKDKVLCVI KLHRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.111160.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040675001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673351.10.0PREDICTED: uncharacterized protein LOC106377633
TrEMBLA0A078GU410.0A0A078GU41_BRANA; BnaC09g32530D protein
STRINGBra002857.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-113NAC domain containing protein 23
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]